IL_6IP8_123

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_123 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1881

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6IP8|1|1A|C|4412
6IP8|1|1A|C|4413
6IP8|1|1A|A|4414
6IP8|1|1A|A|4415
6IP8|1|1A|G|4416
*
6IP8|1|1A|C|4426
6IP8|1|1A|G|4427
6IP8|1|1A|A|4428
6IP8|1|1A|C|4429
6IP8|1|1A|G|4430

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2g

Ubiquitin-60S ribosomal protein L40

Chain zw

Eukaryotic peptide chain release factor subunit 1