IL_6IP8_130
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6IP8|1|1A|A|4548
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_130 not in the Motif Atlas
- Homologous match to IL_5TBW_113
- Geometric discrepancy: 0.5533
- The information below is about IL_5TBW_113
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6IP8|1|1A|C|4537
6IP8|1|1A|G|4538
*
6IP8|1|1A|C|4547
6IP8|1|1A|A|4548
6IP8|1|1A|G|4549
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2D
- 60S ribosomal protein L10-like
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
- Chain zy
- Transfer RNA; tRNA
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