IL_6IP8_138

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

6IP8|1|1A|A|4656, 6IP8|1|1A|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_138 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2837

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6IP8|1|1A|U|4641
6IP8|1|1A|U|4642
*
6IP8|1|1A|A|4655
6IP8|1|1A|A|4656
6IP8|1|1A|U|4657
6IP8|1|1A|G|4658

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2X

60S ribosomal protein L31