IL_6IP8_142
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCUCGGAUAGC*GUGCGGAGUGC
- Length
- 23 nucleotides
- Bulged bases
- 6IP8|1|1A|C|4756, 6IP8|1|1A|C|4757, 6IP8|1|1A|U|4763, 6IP8|1|1A|C|4871, 6IP8|1|1A|G|4872, 6IP8|1|1A|A|4874, 6IP8|1|1A|G|4877
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|G|4755
6IP8|1|1A|C|4756
6IP8|1|1A|C|4757
6IP8|1|1A|U|4758
6IP8|1|1A|C|4759
6IP8|1|1A|G|4760
6IP8|1|1A|G|4761
6IP8|1|1A|A|4762
6IP8|1|1A|U|4763
6IP8|1|1A|A|4764
6IP8|1|1A|G|4765
6IP8|1|1A|C|4766
*
6IP8|1|1A|G|4868
6IP8|1|1A|U|4869
6IP8|1|1A|G|4870
6IP8|1|1A|C|4871
6IP8|1|1A|G|4872
6IP8|1|1A|G|4873
6IP8|1|1A|A|4874
6IP8|1|1A|G|4875
6IP8|1|1A|U|4876
6IP8|1|1A|G|4877
6IP8|1|1A|C|4878
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1H
- 60S ribosomal protein L6
- Chain 2C
- 60S ribosomal protein L9
- Chain 2G
- 60S ribosomal protein L14
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2M
- 60S ribosomal protein L18a
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