IL_6IP8_149

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

6IP8|1|1A|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|U|5003
6IP8|1|1A|C|5004
6IP8|1|1A|G|5005
6IP8|1|1A|U|5006
6IP8|1|1A|A|5007
6IP8|1|1A|C|5008
6IP8|1|1A|G|5009
*
6IP8|1|1A|U|5039
6IP8|1|1A|U|5040
6IP8|1|1A|G|5041
6IP8|1|1A|A|5042
6IP8|1|1A|A|5043
6IP8|1|1A|A|5044

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2Q

60S ribosomal protein L24

Chain 2X

60S ribosomal protein L31