IL_6IP8_154

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_154 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.1878

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

6IP8|1|1B|A|32
6IP8|1|1B|U|33
6IP8|1|1B|C|34
6IP8|1|1B|U|35
6IP8|1|1B|C|36
*
6IP8|1|1B|G|41
6IP8|1|1B|A|42
6IP8|1|1B|U|43
6IP8|1|1B|C|44
6IP8|1|1B|U|45

Current chains

Chain 1B

5S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

60S ribosomal protein L5

Chain 2E

60S ribosomal protein L11