IL_6IP8_172

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_172 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2869

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6IP8|1|2m|U|152
6IP8|1|2m|G|153
6IP8|1|2m|U|154
6IP8|1|2m|G|155
*
6IP8|1|2m|U|163
6IP8|1|2m|A|164
6IP8|1|2m|G|165
6IP8|1|2m|A|166

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3H

40S ribosomal protein S6

Chain 3N

40S ribosomal protein S24