IL_6IP8_173

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_173 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2586

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6IP8|1|2m|C|188
6IP8|1|2m|U|189
6IP8|1|2m|G|190
6IP8|1|2m|A|191
6IP8|1|2m|C|192
*
6IP8|1|2m|G|207
6IP8|1|2m|G|208
6IP8|1|2m|A|209
6IP8|1|2m|U|210
6IP8|1|2m|G|211

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2t

40S ribosomal protein S8