IL_6IP8_178

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_178 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1521

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6IP8|1|2m|G|437
6IP8|1|2m|G|438
6IP8|1|2m|A|439
*
6IP8|1|2m|U|454
6IP8|1|2m|A|455
6IP8|1|2m|C|456

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2t

40S ribosomal protein S8

Chain 3H

40S ribosomal protein S6