IL_6IP8_183

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUACAG*CCUGUAAUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|A|528
6IP8|1|2m|A|529
6IP8|1|2m|U|530
6IP8|1|2m|A|531
6IP8|1|2m|C|532
6IP8|1|2m|A|533
6IP8|1|2m|G|534
*
6IP8|1|2m|C|549
6IP8|1|2m|C|550
6IP8|1|2m|U|551
6IP8|1|2m|G|552
6IP8|1|2m|U|553
6IP8|1|2m|A|554
6IP8|1|2m|A|555
6IP8|1|2m|U|556
6IP8|1|2m|U|557

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30