IL_6IP8_194

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

6IP8|1|2m|C|877

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|C|876
6IP8|1|2m|C|877
6IP8|1|2m|G|878
6IP8|1|2m|C|879
*
6IP8|1|2m|G|907
6IP8|1|2m|A|908
6IP8|1|2m|G|909
6IP8|1|2m|G|910

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2s

40S ribosomal protein S7