IL_6IP8_212

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_212 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1704

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6IP8|1|2m|C|1230
6IP8|1|2m|C|1231
6IP8|1|2m|U|1232
*
6IP8|1|2m|G|1526
6IP8|1|2m|C|1527
6IP8|1|2m|G|1528

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16

Chain 2z

40S ribosomal protein S18

Chain zy

Transfer RNA; tRNA