IL_6IP8_213

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_213 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.1728

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6IP8|1|2m|G|1235
6IP8|1|2m|G|1236
*
6IP8|1|2m|C|1521
6IP8|1|2m|A|1522
6IP8|1|2m|C|1523

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2z

40S ribosomal protein S18

Chain zw

Eukaryotic peptide chain release factor subunit 1

Chain zy

Transfer RNA; tRNA