IL_6IP8_221

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6IP8|1|2m|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|C|1395
6IP8|1|2m|A|1396
6IP8|1|2m|U|1397
6IP8|1|2m|G|1398
6IP8|1|2m|C|1399
*
6IP8|1|2m|G|1447
6IP8|1|2m|A|1448
6IP8|1|2m|G|1449
6IP8|1|2m|G|1450

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16

Chain 2y

40S ribosomal protein S17

Chain 3F

Receptor of activated protein C kinase 1