IL_6IP8_224
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_224 not in the Motif Atlas
- Geometric match to IL_3GM7_002
- Geometric discrepancy: 0.1543
- The information below is about IL_3GM7_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
6IP8|1|2m|A|1537
6IP8|1|2m|C|1538
6IP8|1|2m|U|1539
*
6IP8|1|2m|A|1594
6IP8|1|2m|U|1595
6IP8|1|2m|U|1596
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 20
- 40S ribosomal protein S19
- Chain 2r
- 40S ribosomal protein S5
- Chain 2x
- 40S ribosomal protein S16
- Chain 2z
- 40S ribosomal protein S18
- Chain 3O
- 40S ribosomal protein S25
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