IL_6IP8_226

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUCGG*CAUGAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|G|1604
6IP8|1|2m|G|1605
6IP8|1|2m|G|1606
6IP8|1|2m|A|1607
6IP8|1|2m|U|1608
6IP8|1|2m|C|1609
6IP8|1|2m|G|1610
6IP8|1|2m|G|1611
*
6IP8|1|2m|C|1629
6IP8|1|2m|A|1630
6IP8|1|2m|U|1631
6IP8|1|2m|G|1632
6IP8|1|2m|A|1633
6IP8|1|2m|A|1634
6IP8|1|2m|C|1635

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2r

40S ribosomal protein S5

Chain 2w

40S ribosomal protein S15

Chain 2z

40S ribosomal protein S18