IL_6IP8_231
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6IP8|1|2m|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_231 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3607
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6IP8|1|2m|C|1708
6IP8|1|2m|G|1709
6IP8|1|2m|C|1710
6IP8|1|2m|U|1711
*
6IP8|1|2m|A|1822
6IP8|1|2m|A|1823
6IP8|1|2m|A|1824
6IP8|1|2m|A|1825
6IP8|1|2m|G|1826
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2h
- 60S ribosomal protein L41
- Chain 3B
- 40S ribosomal protein S23
- Chain 3Q
- 40S ribosomal protein S30
- Chain zv
- mRNA
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
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