IL_6IP8_234
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGG*CUA
- Length
- 7 nucleotides
- Bulged bases
- 6IP8|1|2m|U|1721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_234 not in the Motif Atlas
- Geometric match to IL_4TS2_003
- Geometric discrepancy: 0.3225
- The information below is about IL_4TS2_003
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
6IP8|1|2m|U|1720
6IP8|1|2m|U|1721
6IP8|1|2m|G|1722
6IP8|1|2m|G|1723
*
6IP8|1|2m|C|1811
6IP8|1|2m|U|1812
6IP8|1|2m|A|1813
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2P
- 60S ribosomal protein L23
- Chain 2h
- 60S ribosomal protein L41
- Chain 3B
- 40S ribosomal protein S23
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