IL_6IP8_240

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_240 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.1652

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6IP8|1|2m|U|1840
6IP8|1|2m|C|1841
*
6IP8|1|2m|G|1858
6IP8|1|2m|A|1859
6IP8|1|2m|A|1860

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 3C

40S ribosomal protein S26

Chain 3L

40S ribosomal protein S14