IL_6IP8_245

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|zz|C|255
6IP8|1|zz|G|256
6IP8|1|zz|A|257
6IP8|1|zz|G|258
6IP8|1|zz|U|259
6IP8|1|zz|A|260
6IP8|1|zz|G|261
*
6IP8|1|zz|C|272
6IP8|1|zz|G|273
6IP8|1|zz|A|274
6IP8|1|zz|A|275
6IP8|1|zz|A|276
6IP8|1|zz|G|277

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA