IL_6IP8_247

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCC*GGC

Length

7 nucleotides

Bulged bases

6IP8|1|1A|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_247 not in the Motif Atlas

Geometric match to IL_4X4N_005

Geometric discrepancy: 0.2378

The information below is about IL_4X4N_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6IP8|1|1A|G|199
6IP8|1|1A|U|200
6IP8|1|1A|C|201
6IP8|1|1A|C|202
*
6IP8|1|1A|G|213
6IP8|1|1A|G|214
6IP8|1|1A|C|215

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2S

60S ribosomal protein L26

Chain 2Y

60S ribosomal protein L32