IL_6IP8_250

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUAGACAGCAG*CUGCCGAA

Length

20 nucleotides

Bulged bases

6IP8|1|1A|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|U|1957
6IP8|1|1A|A|1958
6IP8|1|1A|U|1959
6IP8|1|1A|A|1960
6IP8|1|1A|G|1961
6IP8|1|1A|A|1962
6IP8|1|1A|C|1963
6IP8|1|1A|A|1964
6IP8|1|1A|G|1965
6IP8|1|1A|C|1966
6IP8|1|1A|A|1967
6IP8|1|1A|G|1968
*
6IP8|1|1A|C|2019
6IP8|1|1A|U|2020
6IP8|1|1A|G|2021
6IP8|1|1A|C|2022
6IP8|1|1A|C|2023
6IP8|1|1A|G|2024
6IP8|1|1A|A|2025
6IP8|1|1A|A|2026

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2M

60S ribosomal protein L18a

Chain 2g

Ubiquitin-60S ribosomal protein L40