IL_6IP8_252

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAACA*UGAA

Length

10 nucleotides

Bulged bases

6IP8|1|1A|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|U|2415
6IP8|1|1A|G|2416
6IP8|1|1A|A|2417
6IP8|1|1A|A|2418
6IP8|1|1A|C|2419
6IP8|1|1A|A|2420
*
6IP8|1|1A|U|2426
6IP8|1|1A|G|2427
6IP8|1|1A|A|2428
6IP8|1|1A|A|2429

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2J

60S ribosomal protein L17

Chain 2L

60S ribosomal protein L19

Chain 2f

60S ribosomal protein L39