IL_6IP8_255
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCCGUAAC*GGAUAAGGA
- Length
- 17 nucleotides
- Bulged bases
- 6IP8|1|1A|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|U|2865
6IP8|1|1A|C|2866
6IP8|1|1A|C|2867
6IP8|1|1A|G|2868
6IP8|1|1A|U|2869
6IP8|1|1A|A|2870
6IP8|1|1A|A|2871
6IP8|1|1A|C|2872
*
6IP8|1|1A|G|2877
6IP8|1|1A|G|2878
6IP8|1|1A|A|2879
6IP8|1|1A|U|2880
6IP8|1|1A|A|2881
6IP8|1|1A|A|2882
6IP8|1|1A|G|2883
6IP8|1|1A|G|2884
6IP8|1|1A|A|2885
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2h
- 60S ribosomal protein L41
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
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