IL_6IP8_266

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGUUCCUUUGG*CAUUCGAA

Length

20 nucleotides

Bulged bases

6IP8|1|2m|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|U|112
6IP8|1|2m|G|113
6IP8|1|2m|G|114
6IP8|1|2m|U|115
6IP8|1|2m|U|116
6IP8|1|2m|C|117
6IP8|1|2m|C|118
6IP8|1|2m|U|119
6IP8|1|2m|U|120
6IP8|1|2m|U|121
6IP8|1|2m|G|122
6IP8|1|2m|G|123
*
6IP8|1|2m|C|342
6IP8|1|2m|A|343
6IP8|1|2m|U|344
6IP8|1|2m|U|345
6IP8|1|2m|C|346
6IP8|1|2m|G|347
6IP8|1|2m|A|348
6IP8|1|2m|A|349

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6