IL_6IP8_267

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCUGAC*GGAUGCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|C|186
6IP8|1|2m|G|187
6IP8|1|2m|C|188
6IP8|1|2m|U|189
6IP8|1|2m|G|190
6IP8|1|2m|A|191
6IP8|1|2m|C|192
*
6IP8|1|2m|G|207
6IP8|1|2m|G|208
6IP8|1|2m|A|209
6IP8|1|2m|U|210
6IP8|1|2m|G|211
6IP8|1|2m|C|212
6IP8|1|2m|G|213

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2t

40S ribosomal protein S8