IL_6IP8_268

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUCAAC*GUGACCACG

Length

16 nucleotides

Bulged bases

6IP8|1|2m|U|361, 6IP8|1|2m|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|U|359
6IP8|1|2m|A|360
6IP8|1|2m|U|361
6IP8|1|2m|C|362
6IP8|1|2m|A|363
6IP8|1|2m|A|364
6IP8|1|2m|C|365
*
6IP8|1|2m|G|395
6IP8|1|2m|U|396
6IP8|1|2m|G|397
6IP8|1|2m|A|398
6IP8|1|2m|C|399
6IP8|1|2m|C|400
6IP8|1|2m|A|401
6IP8|1|2m|C|402
6IP8|1|2m|G|403

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11

Chain 3B

40S ribosomal protein S23