IL_6IP8_274

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAGUAUGG*CUGAAACU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|G|1167
6IP8|1|2m|G|1168
6IP8|1|2m|G|1169
6IP8|1|2m|A|1170
6IP8|1|2m|G|1171
6IP8|1|2m|U|1172
6IP8|1|2m|A|1173
6IP8|1|2m|U|1174
6IP8|1|2m|G|1175
6IP8|1|2m|G|1176
*
6IP8|1|2m|C|1185
6IP8|1|2m|U|1186
6IP8|1|2m|G|1187
6IP8|1|2m|A|1188
6IP8|1|2m|A|1189
6IP8|1|2m|A|1190
6IP8|1|2m|C|1191
6IP8|1|2m|U|1192

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

60S ribosomal protein L41

Chain 3B

40S ribosomal protein S23