IL_6IP8_276
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 6IP8|1|2m|U|1326
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_276 not in the Motif Atlas
- Geometric match to IL_8C3A_008
- Geometric discrepancy: 0.223
- The information below is about IL_8C3A_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6IP8|1|2m|G|1325
6IP8|1|2m|U|1326
6IP8|1|2m|G|1327
6IP8|1|2m|G|1328
*
6IP8|1|2m|C|1501
6IP8|1|2m|C|1502
6IP8|1|2m|C|1503
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2p
- 40S ribosomal protein S3
- Chain 2u
- 40S ribosomal protein S10
- Chain 3E
- 40S ribosomal protein S29
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
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