IL_6IP8_278

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUAGUUACGCGACCCCC*GGCGUCCCCCAACUUCU

Length

35 nucleotides

Bulged bases

6IP8|1|2m|C|1403, 6IP8|1|2m|U|1404, 6IP8|1|2m|G|1413, 6IP8|1|2m|C|1416, 6IP8|1|2m|C|1418, 6IP8|1|2m|G|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|A|1402
6IP8|1|2m|C|1403
6IP8|1|2m|U|1404
6IP8|1|2m|A|1405
6IP8|1|2m|G|1406
6IP8|1|2m|U|1407
6IP8|1|2m|U|1408
6IP8|1|2m|A|1409
6IP8|1|2m|C|1410
6IP8|1|2m|G|1411
6IP8|1|2m|C|1412
6IP8|1|2m|G|1413
6IP8|1|2m|A|1414
6IP8|1|2m|C|1415
6IP8|1|2m|C|1416
6IP8|1|2m|C|1417
6IP8|1|2m|C|1418
6IP8|1|2m|C|1419
*
6IP8|1|2m|G|1428
6IP8|1|2m|G|1429
6IP8|1|2m|C|1430
6IP8|1|2m|G|1431
6IP8|1|2m|U|1432
6IP8|1|2m|C|1433
6IP8|1|2m|C|1434
6IP8|1|2m|C|1435
6IP8|1|2m|C|1436
6IP8|1|2m|C|1437
6IP8|1|2m|A|1438
6IP8|1|2m|A|1439
6IP8|1|2m|C|1440
6IP8|1|2m|U|1441
6IP8|1|2m|U|1442
6IP8|1|2m|C|1443
6IP8|1|2m|U|1444

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2p

40S ribosomal protein S3

Chain 2x

40S ribosomal protein S16

Chain 3F

Receptor of activated protein C kinase 1