IL_6IP8_286

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGA*UACCA

Length

8 nucleotides

Bulged bases

6IP8|1|1A|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|U|3915
6IP8|1|1A|G|3916
6IP8|1|1A|A|3917
*
6IP8|1|1A|U|4384
6IP8|1|1A|A|4385
6IP8|1|1A|C|4386
6IP8|1|1A|C|4387
6IP8|1|1A|A|4388

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain zw

Eukaryotic peptide chain release factor subunit 1

Chain zx

nascent peptide

Chain zy

Transfer RNA; tRNA