IL_6IP8_287
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|C|4466
6IP8|1|1A|A|4467
6IP8|1|1A|U|4468
6IP8|1|1A|U|4469
6IP8|1|1A|G|4470
*
6IP8|1|1A|C|4485
6IP8|1|1A|C|4486
6IP8|1|1A|A|4487
6IP8|1|1A|A|4488
6IP8|1|1A|G|4489
6IP8|1|1A|C|4490
6IP8|1|1A|G|4491
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2C
- 60S ribosomal protein L9
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2P
- 60S ribosomal protein L23
- Chain 2g
- Ubiquitin-60S ribosomal protein L40
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