IL_6IP8_288

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_288 not in the Motif Atlas

Homologous match to IL_8CRE_130

Geometric discrepancy: 0.5217

The information below is about IL_8CRE_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6IP8|1|1A|G|4740
6IP8|1|1A|C|4741
6IP8|1|1A|G|4742
*
6IP8|1|1A|C|4957
6IP8|1|1A|C|4958
6IP8|1|1A|U|4959

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains