IL_6IP8_290

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAAAAAAUU*ACCGCAGCUA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|U|805
6IP8|1|2m|U|806
6IP8|1|2m|G|807
6IP8|1|2m|A|808
6IP8|1|2m|A|809
6IP8|1|2m|A|810
6IP8|1|2m|A|811
6IP8|1|2m|A|812
6IP8|1|2m|A|813
6IP8|1|2m|U|814
6IP8|1|2m|U|815
*
6IP8|1|2m|A|849
6IP8|1|2m|C|850
6IP8|1|2m|C|851
6IP8|1|2m|G|852
6IP8|1|2m|C|853
6IP8|1|2m|A|854
6IP8|1|2m|G|855
6IP8|1|2m|C|856
6IP8|1|2m|U|857
6IP8|1|2m|A|858

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2v

40S ribosomal protein S11

Chain 3I

40S ribosomal protein S9

Chain 3M

40S ribosomal protein S15a