IL_6J6N_001
3D structure
- PDB id
- 6J6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UCU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6J6N_001 not in the Motif Atlas
- Geometric match to IL_4LFB_010
- Geometric discrepancy: 0.2224
- The information below is about IL_4LFB_010
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6J6N|1|B|U|6
6J6N|1|B|C|7
6J6N|1|B|U|8
*
6J6N|1|E|A|45
6J6N|1|E|U|46
6J6N|1|E|A|47
Current chains
- Chain B
- UBC4 pre-mRNA
- Chain E
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain H
- Pre-mRNA-splicing factor ISY1
- Chain R
- Pre-mRNA-splicing factor CWC2
- Chain c
- Pre-mRNA-splicing factor CEF1
Coloring options: