6J6N Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6J6N_002 | 1/D/93:101 | No text annotation | ||
| HL_6J6N_005 | 1/E/70:76 | GNRA | homologous HL_6ASO_001 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6J6N_001 | No text annotation | ||
| HL_6J6N_003 | No text annotation | ||
| HL_6J6N_004 | No text annotation | ||
| HL_6J6N_006 | No text annotation | ||
| HL_6J6N_007 | No text annotation | ||
| HL_6J6N_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6J6N_005 | 1/D/32:34, 1/D/120:121 | No text annotation | ||
| IL_6J6N_006 | 1/D/80:84, 1/D/110:112 | No text annotation | ||
| IL_6J6N_007 | 1/D/91:93, 1/D/101:103 | No text annotation | ||
| IL_6J6N_008 | 1/E/58:59, 1/L/23:26 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.1 | |
| IL_6J6N_009 | 1/E/65:67, 1/E/81:82 | Single bulged C | geometric IL_8F5G_002 IL_05642.1 | |
| IL_6J6N_010 | 1/E/67:68, 1/E/78:81 | Multiple bulged bases | geometric IL_7RQB_098 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6J6N_001 | Isolated non-canonical cWW pair | ||
| IL_6J6N_016 | Tandem non-canonical cWW pairs | ||
| IL_6J6N_017 | No text annotation | ||
| IL_6J6N_002 | No text annotation | ||
| IL_6J6N_003 | No text annotation | ||
| IL_6J6N_004 | No text annotation | ||
| IL_6J6N_018 | No text annotation | ||
| IL_6J6N_011 | No text annotation | ||
| IL_6J6N_012 | No text annotation | ||
| IL_6J6N_019 | No text annotation | ||
| IL_6J6N_013 | No text annotation | ||
| IL_6J6N_014 | No text annotation | ||
| IL_6J6N_015 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6J6N_005 | 1/D/25:28, 1/D/125:132, 1/D/145:146 | No text annotation | ||
| J3_6J6N_001 | 1/D/40:46, 1/D/69:79, 1/D/113:114 | No text annotation | ||
| J3_6J6N_004 | 1/E/61:63, 1/E/84:93, 1/L/12:21 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6J6N_003 | No text annotation | ||
| J3_6J6N_002 | No text annotation |
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