IL_6J6N_002

3D structure

PDB id

6J6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

6J6N|1|D|U|160

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6J6N|1|D|A|5
6J6N|1|D|G|6
*
6J6N|1|D|C|159
6J6N|1|D|U|160
6J6N|1|D|U|161

Current chains

Chain D

U5 snRNA

Nearby chains

Chain C

Pre-mRNA-splicing factor SNU114

Chain k

Small nuclear ribonucleoprotein-associated protein B

Chain l

Small nuclear ribonucleoprotein Sm D3

Chain m

Small nuclear ribonucleoprotein Sm D1