IL_6J6N_009
3D structure
- PDB id
- 6J6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UCC*GA
- Length
- 5 nucleotides
- Bulged bases
- 6J6N|1|E|C|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6J6N_009 not in the Motif Atlas
- Geometric match to IL_8F5G_002
- Geometric discrepancy: 0.3864
- The information below is about IL_8F5G_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
6J6N|1|E|U|65
6J6N|1|E|C|66
6J6N|1|E|C|67
*
6J6N|1|E|G|81
6J6N|1|E|A|82
Current chains
- Chain E
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- UBC4 pre-mRNA
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-processing protein 45
- Chain Q
- Pre-mRNA-splicing factor SLT11
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1
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