IL_6JFU_004

3D structure

PDB id

6JFU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUCU*AUC

Length

8 nucleotides

Bulged bases

6JFU|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6JFU_004 not in the Motif Atlas

Geometric match to IL_6JDV_004

Geometric discrepancy: 0.1228

The information below is about IL_6JDV_004

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

6JFU|1|B|G|93
6JFU|1|B|C|94
6JFU|1|B|U|95
6JFU|1|B|C|96
6JFU|1|B|U|97
*
6JFU|1|B|A|126
6JFU|1|B|U|127
6JFU|1|B|C|128

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9