IL_6K3Z_001

3D structure

PDB id

6K3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAG*CAAGUU

Length

10 nucleotides

Bulged bases

6K3Z|1|A|A|28, 6K3Z|1|A|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6K3Z_001 not in the Motif Atlas

Geometric match to IL_5FQ5_001

Geometric discrepancy: 0.1014

The information below is about IL_5FQ5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82683.4

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6K3Z|1|A|A|26
6K3Z|1|A|G|27
6K3Z|1|A|A|28
6K3Z|1|A|G|29
*
6K3Z|1|A|C|40
6K3Z|1|A|A|41
6K3Z|1|A|A|42
6K3Z|1|A|G|43
6K3Z|1|A|U|44
6K3Z|1|A|U|45

Current chains

Chain A

RNA (81-MER)

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9