Motif IL_82683.4 Version IL_82683.4 of this group appears in releases 4.2 to 4.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8	1-8	5-6
1	IL_8KAL_008	8KAL	0.1525	2	A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	ncWW	cWW
2	IL_7QQP_001	7QQP	0.0435	2	A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
3	IL_7QQX_001	7QQX	0.0000	2	A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
4	IL_7QR0_001	7QR0	0.0355	2	A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
5	IL_5FQ5_001	5FQ5	0.0403	2	A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
6	IL_5B2T_001	5B2T	0.0410	2	A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
7	IL_5VW1_001	5VW1	0.0827	2	C	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
8	IL_8KAJ_002	8KAJ	0.1290	2	I+A	tracrRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGUU*AGAG	8

Non-Watson-Crick part of the motif

Sequence	Counts
AAGU*GA	8

Release history

Release	4.2
Date	2025-10-08
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-L-R-L-cWW-L
Heat map statistics: Min 0.04 | Avg 0.09 | Max 0.17

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Coloring options: Nucleotide numbers

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