IL_6K3Z_002

3D structure

PDB id

6K3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

6K3Z|1|A|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6K3Z_002 not in the Motif Atlas

Geometric match to IL_5F9R_003

Geometric discrepancy: 0.0902

The information below is about IL_5F9R_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6K3Z|1|A|G|54
6K3Z|1|A|C|55
*
6K3Z|1|A|G|58
6K3Z|1|A|U|59
6K3Z|1|A|C|60

Current chains

Chain A

RNA (81-MER)

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9