IL_6KE6_011

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

6KE6|1|5A|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_011 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.2962

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90176.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

6KE6|1|5A|G|107
6KE6|1|5A|U|108
6KE6|1|5A|C|109
6KE6|1|5A|G|110
*
6KE6|1|5A|U|136
6KE6|1|5A|C|137

Current chains

Chain 5A

5' ETS

Nearby chains

Chain A5

U3 small nucleolar RNA-associated protein 5

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain RO

Nucleolar complex protein 4