IL_6KE6_039
3D structure
- PDB id
- 6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6KE6_039 not in the Motif Atlas
- Homologous match to IL_4V88_391
- Geometric discrepancy: 0.3132
- The information below is about IL_4V88_391
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6KE6|1|SA|G|109
6KE6|1|SA|U|110
6KE6|1|SA|U|111
6KE6|1|SA|A|112
*
6KE6|1|SA|U|302
6KE6|1|SA|U|303
6KE6|1|SA|U|304
6KE6|1|SA|C|305
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain SF
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S8-A
- Chain SM
- 40S ribosomal protein S11-A
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