IL_6KE6_040

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGUU*AAA

Length

8 nucleotides

Bulged bases

6KE6|1|SA|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_040 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2601

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6KE6|1|SA|U|113
6KE6|1|SA|C|114
6KE6|1|SA|G|115
6KE6|1|SA|U|116
6KE6|1|SA|U|117
*
6KE6|1|SA|A|299
6KE6|1|SA|A|300
6KE6|1|SA|A|301

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A