3D structure

PDB id
6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6KE6_078 not in the Motif Atlas
Geometric match to IL_6DLR_003
Geometric discrepancy: 0.1854
The information below is about IL_6DLR_003
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_34520.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
58

Unit IDs

6KE6|1|SA|C|1174
6KE6|1|SA|U|1175
6KE6|1|SA|G|1176
*
6KE6|1|SA|C|1463
6KE6|1|SA|G|1464

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5G
U3 small nucleolar ribonucleoprotein protein IMP4
Chain RJ
Ribosome biogenesis protein BMS1
Chain RN
Nucleolar complex protein 14

Coloring options:


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