IL_6KE6_085

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUA*UUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_085 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.3252

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6KE6|1|SA|C|1664
6KE6|1|SA|U|1665
6KE6|1|SA|U|1666
6KE6|1|SA|A|1667
*
6KE6|1|SA|U|1734
6KE6|1|SA|U|1735
6KE6|1|SA|G|1736
6KE6|1|SA|G|1737

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B2

U3 small nucleolar RNA-associated protein 12