IL_6LKQ_015

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGUA*UAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_015 not in the Motif Atlas

Homologous match to IL_6CZR_124

Geometric discrepancy: 0.2273

The information below is about IL_6CZR_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38684.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LKQ|1|s|U|249
6LKQ|1|s|A|250
6LKQ|1|s|G|251
6LKQ|1|s|U|252
6LKQ|1|s|A|253
*
6LKQ|1|s|U|273
6LKQ|1|s|A|274
6LKQ|1|s|G|275

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17