IL_6LKQ_020

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAAGAAG*UGUAAAGU

Length

17 nucleotides

Bulged bases

6LKQ|1|s|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|s|A|408
6LKQ|1|s|U|409
6LKQ|1|s|G|410
6LKQ|1|s|A|411
6LKQ|1|s|A|412
6LKQ|1|s|G|413
6LKQ|1|s|A|414
6LKQ|1|s|A|415
6LKQ|1|s|G|416
*
6LKQ|1|s|U|427
6LKQ|1|s|G|428
6LKQ|1|s|U|429
6LKQ|1|s|A|430
6LKQ|1|s|A|431
6LKQ|1|s|A|432
6LKQ|1|s|G|433
6LKQ|1|s|U|434

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4