IL_6LKQ_022

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6LKQ|1|s|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6LKQ|1|s|G|446
6LKQ|1|s|G|447
6LKQ|1|s|A|448
6LKQ|1|s|G|449
6LKQ|1|s|G|450
*
6LKQ|1|s|C|483
6LKQ|1|s|G|484
6LKQ|1|s|U|485
6LKQ|1|s|U|486
6LKQ|1|s|A|487
6LKQ|1|s|C|488

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain O

30S ribosomal protein S16

Chain v

Peptide chain release factor 3